PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094333.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 235aa    MW: 25750.3 Da    PI: 8.6514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094333.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002783105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C + F ++  L  H++ H
  XP_010094333.1  83 FKCEYCYQEFATSQALGGHQNAH 105
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.84E-582110No hitNo description
PROSITE profilePS5015711.38583110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSCSSSSSKN FSADHEGKKK KPSSSSSSKV FKLFGFPVTS RDIQMPVNNT TIRPKPELPC  60
SNNNSNSYNY NYYNMSKRLS SRFKCEYCYQ EFATSQALGG HQNAHKSERK VAKLRAQFQL  120
GHPNYNVNNN PYQNPYYFVA SNYSTTSTGQ IIAVQAAAGS SLATSTSGVG AGAAAGGEVK  180
PMTENVDMSD HDHEYPKVSY NKGVCHGELG INYHDQGSDD LDLQLRLAPS NNLLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094333.11e-176Zinc finger protein 6
TrEMBLW9R6H81e-176W9R6H8_9R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-11C2H2 family protein